Sever commander is not playing ball at the moment, may have to speak to Rog to get some help, but for obvious reasons I'm not going to bother him with this stuff at the moment.
Have posted over at ATAG the issue, so hopefully they might be able to help, but i suspect its a problem to do with exceptions on our server box, due to miscommunication between the launcher and the server commander.
I can start the server manually, but i cant rotate missions etc, so if i'm around we can play on the dangerdogz server, lol.